Plotting Spectra with pplot
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− | {{ | + | {{DavinciWiki_Procedure| |
− | Run through a variety of [[pplot|pplot()]] cases. | + | Run through a variety of [[pplot|pplot()]] cases. The commands can be run automatically by using [[pplot_tutorial|pplot_tutorial()]]. |
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− | + | Setup all the data we need...lots of output will be printed (but has been omitted here) | |
+ | dv> xlab1 = make_band(lab1=1) | ||
+ | dv> xtes = make_band(tes=1) | ||
+ | dv> xmtes = make_band(mtes=1) | ||
+ | dv> xthemis = make_band(themis=1) | ||
+ | dv> xthemiscm = make_band(themis=1, cm=1) | ||
+ | dv> xastercm = make_band(aster=1, cm=1) | ||
+ | dv> xtimscm = make_band(tims=1, cm=1) | ||
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+ | # mini-TES data | ||
+ | dv> minites_emiss = read($DV_EX+"/minites_cube.vicar") | ||
+ | dv> array=minites_emiss[8:11, 5:6] | ||
+ | dv> xx=array[1:4,1] | ||
+ | dv> yy=array[1,1:2] | ||
+ | dv> a=array[1,1] | ||
+ | dv> b=array[2,2] | ||
+ | dv> c=array[2,1] | ||
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+ | # tes data | ||
+ | dv> tes_emiss = read($DV_EX+"/TES_emissivity_example.vic") | ||
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+ | # lab data | ||
+ | dv> asu = read($DV_EX+"/ASU_minlib.hdf") | ||
+ | dv> spectrum = asu.data[1] | ||
+ | dv> lab_array = asu.data[1:5] | ||
+ | dv> spec_struc = read($DV_EX+"/lab_structure.hdf") | ||
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+ | # make simulated aster data from lab - wavenumber x-axis | ||
+ | dv> asterdata = i2i(asu.data, from='lab1', to='aster', cm=1) | ||
+ | # make simulated tims data from lab - wavenumber x-axis | ||
+ | dv> timsdata = i2i(asu.data, from='lab1', to='tims', cm=1) | ||
+ | # make simulated aster data from lab - wavelength x-axis | ||
+ | dv> asterdata = i2i(asu.data, from='lab1', to='aster') | ||
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+ | # make some simulated themis data - wavelength x-axis | ||
+ | dv> emthemis_cube = i2i(asu.data[1:3], from = 'lab1', to='themis') | ||
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+ | # convert lab1 data to aster, tims, and themis with wavenumber x-axis | ||
+ | dv> a1 = i2i(asu.data[1], from='lab1', to='aster', cm=1) | ||
+ | dv> t1 = i2i(asu.data[1], from='lab1', to='tims', cm=1) | ||
+ | dv> th1 = i2i(asu.data[1], from='lab1', to='themis', cm=1) | ||
− | + | '''Each image corresponds to the listed command''' | |
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− | + | Simplest possible case: 1 vector, no colors, no labels - like xplot | |
− | dv> | + | dv> pplot(spectrum) |
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− | + | [[Image:pplot2_tutorial1.png|500px]] | |
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− | + | 2. Simple case: 1 vector with user-input x-axis, no colors, no labels | |
− | [[Image: | + | dv> pplot(spectrum, xaxis=xlab1) |
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− | + | [[Image:pplot2_tutorial2.png|500px]] | |
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− | + | 3. Next simplest case: 1 array, user-input x-axis, no colors, no labels - will cycle colors automatically | |
− | [[Image: | + | dv> pplot(lab_array, xaxis=xlab1) |
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− | + | [[Image:pplot2_tutorial3.png|500px]] | |
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− | [[Image: | + | 4. Array of spectra, 1 color (for all), 1 label, x and y axis labels, key in specfic location Note: Order doesn't matter for colors and labels) |
− | + | dv> pplot(lab_array, 'Lab Spectra', 5, xaxis=xlab1, xlabel = 'Wavenumber', ylabel = 'Emissivity', key= '1400, .91') | |
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+ | [[Image:pplot2_tutorial4.png|500px]] | ||
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+ | 5. Array of spectra, 1 color (for all), 1 label, standardized lab plot | ||
+ | dv> pplot(lab_array, 5, 'Lab Spectra', lab1=1) | ||
+ | ............................................................................... | ||
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+ | [[Image:pplot2_tutorial5.png|500px]] | ||
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+ | 6. 1 array, 1 label, no colors specified - will auto cycle through colors and add index to label. Key in bottom right. Standard Mini-TES plot | ||
+ | dv> pplot(array, 'Mini-TES Array', key = 'bottom right', mtes=1) | ||
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+ | [[Image:pplot2_tutorial6.png|500px]] | ||
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+ | 7. 2 different data elements with different x axes. x, y limits, manually make lower x-axis wavelength but linear in cm-1. The x-axis is in wavenumber, but want a plot that is in wavelength on the lower axis. line weight 5, font_size 26, x-axis, y-axis, and plot labels | ||
+ | dv> pplot({asudata[1:2], asterdata[1:2]}, xaxis={xlab1, xastercm}, {'Lab', 'ASTER'}, key = 'outside', \ | ||
+ | wave=1, x1=500, x2=1500, y1=.7, y2=1.05, lw = 5, font_size=26, xlabel='Wavenumber', \ | ||
+ | ylabel='Emissivity', plot_title = 'Lab and ASTER Example') | ||
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+ | [[Image:pplot2_tutorial7.png|500px]] | ||
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+ | 8. 2 data elements (1 array & 1 vector), 2 colors, 2 labels - single color and single label for each data element | ||
+ | dv> pplot({array, avg(array, xy)}, {1,2}, {'Spectra', 'Ave. Spectrum'}, xaxis=xmtes, x1=500, \ | ||
+ | x2=1800, y1=.7, y2=1.02, cm=1) | ||
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+ | [[Image:pplot2_tutorial8.png|500px]] | ||
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+ | 9. ASU spectral structure example | ||
+ | dv> pplot(spec_struc) | ||
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+ | [[Image:pplot2_tutorial9.png|500px]] | ||
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+ | 10. Resample example - lab, mtes, tes, and themis spectra | ||
+ | dv> pplot({asu.data[1], a1, t1, th1},{1,2,3,4}, {'Lab','ASTER', 'TIMS', 'THEMIS'}, key='1450,.96', \ | ||
+ | xaxis={xlab1, xacm, xtcm, xthcm}, x1=500, x2=1800, y1=.88, y2=1.01) | ||
+ | doing broadband | ||
+ | ......................................................... | ||
+ | doing broadband | ||
+ | ......................................................... | ||
+ | doing broadband | ||
+ | ......................................................... | ||
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+ | [[Image:pplot2_tutorial10.png|500px]] | ||
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+ | 11. write to ps and pdf files. TES default plot, wavenumber on bottom x axis, ps, pdf | ||
+ | dv> pplot({tes_emiss[1:3,1]}, {'TES Array'}, key = '900, .9', tes=1, emiss=1, cm=1, \ | ||
+ | ps=$TMPDIR+"/junk.ps", pdf=1) | ||
Outputting postscript to file: ./junk.ps | Outputting postscript to file: ./junk.ps | ||
− | Wavelength on the | + | Wavelength on the top |
converting to pdf file ./junk.ps.pdf | converting to pdf file ./junk.ps.pdf | ||
Using postscript line colors from file: /u/cedwards/.Xdefaults | Using postscript line colors from file: /u/cedwards/.Xdefaults | ||
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− | [[Image: | + | [[Image:pplot2_tutorial11.png|500px]] |
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− | + | '''Now I'll demonstrate the more esoteric functions and features''' | |
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− | [[Image: | + | 3 vectors, 3 labels, no colors - will auto cycle through colors |
− | + | dv> pplot({a,b,c}, {'V1', 'V2', 'V3'}, mtes=1) | |
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− | key=' | + | [[Image:pplot2_tutorial12.png|500px]] |
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− | [[Image: | + | 2 data elements, 2 colors, 2 labels in structures - single color and single label for each data element |
− | + | dv> plot({array, xx}, {1,2}, {'a', 'b'}, mtes=1) | |
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+ | [[Image:pplot2_tutorial13.png|500px]] | ||
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+ | Just 1 data element with 4 vectors in x, 4 labels, 4 colors | ||
+ | dv> pplot(array[1:4, 1], {1,3,5,6}, {'a', 'b', 'b', 'd'}, mtes=1) | ||
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+ | [[Image:pplot2_tutorial14.png|500px]] | ||
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+ | 3 data elements, colors WERE specified, one color for each and 1 label for 'a', 'xx', 'yy' | ||
+ | dv> pplot({array,xx, yy}, {1,3,7}, {'a','xx', 'yy'}, mtes=1) | ||
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+ | [[Image:pplot2_tutorial15.png|500px]] | ||
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+ | THEMIS default plot, wavelength on bottom x axis | ||
+ | dv> pplot(emthemis_cube, 'THEMIS', key = '1100, .96', themis=1, emiss=1) | ||
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+ | [[Image:pplot2_tutorial16.png|500px]] | ||
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*[[pplot]] | *[[pplot]] | ||
*[[make_band]] | *[[make_band]] | ||
− | *[[ | + | *[[i2i]] |
− | *[[ | + | *[[read]] |
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+ | *[[pplot]] | ||
*[[plot]] | *[[plot]] | ||
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*[[xplot]] | *[[xplot]] | ||
− | + | *[[triplot]] | |
− | * | + | |
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}} | }} | ||
− | [[category: | + | [[category:Procedures]] |
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Latest revision as of 18:04, 7 September 2010
Contents: Description, Procedure, Functions Used, Related Functions
Description Run through a variety of pplot() cases. The commands can be run automatically by using pplot_tutorial().
Procedure Setup all the data we need...lots of output will be printed (but has been omitted here) dv> xlab1 = make_band(lab1=1) dv> xtes = make_band(tes=1) dv> xmtes = make_band(mtes=1) dv> xthemis = make_band(themis=1) dv> xthemiscm = make_band(themis=1, cm=1) dv> xastercm = make_band(aster=1, cm=1) dv> xtimscm = make_band(tims=1, cm=1) # mini-TES data dv> minites_emiss = read($DV_EX+"/minites_cube.vicar") dv> array=minites_emiss[8:11, 5:6] dv> xx=array[1:4,1] dv> yy=array[1,1:2] dv> a=array[1,1] dv> b=array[2,2] dv> c=array[2,1] # tes data dv> tes_emiss = read($DV_EX+"/TES_emissivity_example.vic") # lab data dv> asu = read($DV_EX+"/ASU_minlib.hdf") dv> spectrum = asu.data[1] dv> lab_array = asu.data[1:5] dv> spec_struc = read($DV_EX+"/lab_structure.hdf") # make simulated aster data from lab - wavenumber x-axis dv> asterdata = i2i(asu.data, from='lab1', to='aster', cm=1) # make simulated tims data from lab - wavenumber x-axis dv> timsdata = i2i(asu.data, from='lab1', to='tims', cm=1) # make simulated aster data from lab - wavelength x-axis dv> asterdata = i2i(asu.data, from='lab1', to='aster') # make some simulated themis data - wavelength x-axis dv> emthemis_cube = i2i(asu.data[1:3], from = 'lab1', to='themis') # convert lab1 data to aster, tims, and themis with wavenumber x-axis dv> a1 = i2i(asu.data[1], from='lab1', to='aster', cm=1) dv> t1 = i2i(asu.data[1], from='lab1', to='tims', cm=1) dv> th1 = i2i(asu.data[1], from='lab1', to='themis', cm=1) Each image corresponds to the listed command Simplest possible case: 1 vector, no colors, no labels - like xplot dv> pplot(spectrum) 2. Simple case: 1 vector with user-input x-axis, no colors, no labels dv> pplot(spectrum, xaxis=xlab1) 3. Next simplest case: 1 array, user-input x-axis, no colors, no labels - will cycle colors automatically dv> pplot(lab_array, xaxis=xlab1) 4. Array of spectra, 1 color (for all), 1 label, x and y axis labels, key in specfic location Note: Order doesn't matter for colors and labels) dv> pplot(lab_array, 'Lab Spectra', 5, xaxis=xlab1, xlabel = 'Wavenumber', ylabel = 'Emissivity', key= '1400, .91') 5. Array of spectra, 1 color (for all), 1 label, standardized lab plot dv> pplot(lab_array, 5, 'Lab Spectra', lab1=1) ............................................................................... 6. 1 array, 1 label, no colors specified - will auto cycle through colors and add index to label. Key in bottom right. Standard Mini-TES plot dv> pplot(array, 'Mini-TES Array', key = 'bottom right', mtes=1) 7. 2 different data elements with different x axes. x, y limits, manually make lower x-axis wavelength but linear in cm-1. The x-axis is in wavenumber, but want a plot that is in wavelength on the lower axis. line weight 5, font_size 26, x-axis, y-axis, and plot labels dv> pplot({asudata[1:2], asterdata[1:2]}, xaxis={xlab1, xastercm}, {'Lab', 'ASTER'}, key = 'outside', \ wave=1, x1=500, x2=1500, y1=.7, y2=1.05, lw = 5, font_size=26, xlabel='Wavenumber', \ ylabel='Emissivity', plot_title = 'Lab and ASTER Example') 8. 2 data elements (1 array & 1 vector), 2 colors, 2 labels - single color and single label for each data element dv> pplot({array, avg(array, xy)}, {1,2}, {'Spectra', 'Ave. Spectrum'}, xaxis=xmtes, x1=500, \ x2=1800, y1=.7, y2=1.02, cm=1) 9. ASU spectral structure example dv> pplot(spec_struc) 10. Resample example - lab, mtes, tes, and themis spectra dv> pplot({asu.data[1], a1, t1, th1},{1,2,3,4}, {'Lab','ASTER', 'TIMS', 'THEMIS'}, key='1450,.96', \ xaxis={xlab1, xacm, xtcm, xthcm}, x1=500, x2=1800, y1=.88, y2=1.01) doing broadband ......................................................... doing broadband ......................................................... doing broadband ......................................................... 11. write to ps and pdf files. TES default plot, wavenumber on bottom x axis, ps, pdf dv> pplot({tes_emiss[1:3,1]}, {'TES Array'}, key = '900, .9', tes=1, emiss=1, cm=1, \ ps=$TMPDIR+"/junk.ps", pdf=1) Outputting postscript to file: ./junk.ps Wavelength on the top converting to pdf file ./junk.ps.pdf Using postscript line colors from file: /u/cedwards/.Xdefaults Now I'll demonstrate the more esoteric functions and features 3 vectors, 3 labels, no colors - will auto cycle through colors dv> pplot({a,b,c}, {'V1', 'V2', 'V3'}, mtes=1) 2 data elements, 2 colors, 2 labels in structures - single color and single label for each data element dv> plot({array, xx}, {1,2}, {'a', 'b'}, mtes=1) Just 1 data element with 4 vectors in x, 4 labels, 4 colors dv> pplot(array[1:4, 1], {1,3,5,6}, {'a', 'b', 'b', 'd'}, mtes=1) 3 data elements, colors WERE specified, one color for each and 1 label for 'a', 'xx', 'yy' dv> pplot({array,xx, yy}, {1,3,7}, {'a','xx', 'yy'}, mtes=1) THEMIS default plot, wavelength on bottom x axis dv> pplot(emthemis_cube, 'THEMIS', key = '1100, .96', themis=1, emiss=1) |
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